microbesonline.orgMicrobesOnline - A website for browsing and comparing microbial genomes

Login / Register Sequence Search Advanced Search Browse Functional Data Contact Us Switch to Add genomes: [ help ] [ Species tree ] Or select from Favorites: Escherichia coli str. K-12 substr. MG1655 Bacillus subtilis subsp. subtilis str. 168 Desulfovibrio vulgaris Hildenborough Desulfovibrio vulgaris DP4 Zymomonas mobilis subsp. mobilis ZM4 Shewanella oneidensis MR-1 Desulfovibrio desulfuricans G20 Geobacter metallireducens GS-15 Geobacter sulfurreducens PCA Bdellovibrio bacteriovorus HD100 Desulfotalea psychrophila LSv54 Desulforudis audaxviator MP104C [ Show plasmids/viruses ] Genomes selected: None (defaults to Favorites) Favorites: Search genes in selected genomes: [ help ] Genome actions: Examples, based on E. coli K-12 . A tutorial is also available. Genome Info Gene Info Known and Predicted Operons Homologs Gene and Domain Families Domain Browser Tree-based Genome Browser Species Tree Metabolic Networks Alignments to Protein Structures Functional Data Functional Profile Search Phylogenetic Profile Interactive Viewer for Metabolic Pathways and Experiments Quick sequence search: Enter nucleotide protein sequence in FASTA format: About FastBLAST # end removed by dylanAbout MicrobesOnline: Tutorial (PDF)Publications Release notes Data sources Programmatic access FastBLAST FastTree Operon predictions Microarray analysis & visualizationAbout ESPP Arkin lab MicrobesOnline highlights: 3707 genomes , including 1752 bacteria , 94 archaea , and 119 eukaryotes Gene Expression Data for 113 organisms with 27581 total comparisons Fitness Data for 4 organisms with 2030 total comparisons Annotate your favorite genes Host your pre-release genome or functional data privately Public programmatic access to our SQL database Homologs, PDBs, domains & families , metabolic maps and operon predictions Find genes by phyletic pattern Tree-based browser with pre-computed phylogenies for all gene families Build your own sequence alignments and phylogenetic trees from "Gene Carts" Microarray data : heatmaps , gene and experiment correlations, profile searches and overlays on metabolism Annotate your favorite genes, or ask us about hosting your unpublished genome or microarray data confidentially Public access to our SQL database # end removed by dylan To cite MicrobesOnline, please use this paper . MicrobesOnline is a product of the Virtual Institute for Microbial Stress and Survival , which is sponsored by the US Department of Energy Genomics:GTL...